feat(harness,rag): dual LLM audit fields, run conclusion, and hybrid quality
Persist provider reasoning and assistant text separately on agent_reasoning_audit (DeepSeekAssistantMessage path), extract diagnosis_run.conclusion, enrich RAG tool audit (step_id/query/qualityScore), gate empty mysql tools, drop devtools, and align MVP docs after live E2E verification.
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## 规格证据
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- 旧 `openspec/specs/rag-knowledge-retrieval` 要求 source 级 dedup(本 change 以 delta 修正)
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- `docs/milvus-hybrid-search-integration-checklist.md` §1.1 定义 Delivery 1 地基
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- `docs/Milvus-Hybrid接入清单.md` §1.1 定义 Delivery 1 地基
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## 验证证据
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