Persist provider reasoning and assistant text separately on agent_reasoning_audit
(DeepSeekAssistantMessage path), extract diagnosis_run.conclusion, enrich RAG
tool audit (step_id/query/qualityScore), gate empty mysql tools, drop devtools,
and align MVP docs after live E2E verification.
Add repairable INVALID_PROGRESS_PROTOCOL observations, independent
PROGRESS_PROTOCOL_VIOLATED saturation, and controlled release paths.
Archive the OpenSpec change after syncing main specs and devflow.
Preserve same-document multi-chunk evidence with evidenceKey identity,
per-document caps, retrieve-k/return-n split, and a dense KnowledgeSearchPort.
Archives Delivery 1 OpenSpec change as the foundation for hybrid retrieval.
Document the lookup_knowledge flow from L0 hints through L1 retrieval,
post-processing, packing, and Agent projection so the boundaries and
current limitations are easier to follow.